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Mimivirus phylogenetic trees

(see methods)

Mimi gene(s) COG COG annotation COG function
R663
[fasta] [tree]
tree for
COG0018
ArgS, Arginyl-tRNA synthetase Translation, ribosomal structure and biogenesis
R464
[fasta] [tree]
tree for
COG0023
SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins Translation, ribosomal structure and biogenesis
L244
[fasta] [tree]
tree for
COG0085
RpoB, DNA-directed RNA polymerase, beta subunit/140 kD subunit Transcription
R501
[fasta] [tree]
tree for
COG0086
RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit Transcription
R418
[fasta] [tree]
tree for
COG0105
Ndk, Nucleoside diphosphate kinase Nucleotide transport and metabolism
R639
[fasta] [tree]
tree for
COG0143
MetG, Methionyl-tRNA synthetase Translation, ribosomal structure and biogenesis
L124
[fasta] [tree]
tree for
COG0162
TyrS, Tyrosyl-tRNA synthetase Translation, ribosomal structure and biogenesis
R565
[fasta] [tree]
tree for
COG0174
GlnA, Glutamine synthetase Amino acid transport and metabolism
R480
[fasta] [tree]
tree for
COG0187
GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit DNA replication, recombination, and repair
R480
[fasta] [tree]
tree for
COG0188
GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit DNA replication, recombination, and repair
R497
[fasta] [tree]
tree for
COG0207
ThyA, Thymidylate synthase Nucleotide transport and metabolism
L312
[fasta] [tree]
tree for
COG0208
NrdF, Ribonucleotide reductase, beta subunit Nucleotide transport and metabolism
R313
[fasta] [tree]
tree for
COG0209
NrdA, Ribonucleotide reductase, alpha subunit Nucleotide transport and metabolism
L164
[fasta] [tree]
tree for
COG0215
CysS, Cysteinyl-tRNA synthetase Translation, ribosomal structure and biogenesis
L359
[fasta] [tree]
tree for
COG0249
MutS, Mismatch repair ATPase (MutS family) DNA replication, recombination, and repair
L386
[fasta] [tree]
tree for
COG0258
Exo, 5'-3' exonuclease (including N-terminal domain of PolI) DNA replication, recombination, and repair
R497
[fasta] [tree]
tree for
COG0262
FolA, Dihydrofolate reductase Coenzyme metabolism
L315
L720
[fasta] [tree]
tree for
COG0266
Nei, Formamidopyrimidine-DNA glycosylase DNA replication, recombination, and repair
R303
[fasta] [tree]
tree for
COG0272
Lig, NAD-dependent DNA ligase (contains BRCT domain type II) DNA replication, recombination, and repair
R614
[fasta] [tree]
tree for
COG0330
HflC, Membrane protease subunits, stomatin/prohibitin homologs Posttranslational modification, protein turnover, chaperones
R693
[fasta] [tree]
tree for
COG0350
Ada, Methylated DNA-protein cysteine methyltransferase DNA replication, recombination, and repair
R475
[fasta] [tree]
tree for
COG0367
AsnB, Asparagine synthase (glutamine-hydrolyzing) Amino acid transport and metabolism
L136
[fasta] [tree]
tree for
COG0399
WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis Cell envelope biogenesis, outer membrane
R322
[fasta] [tree]
tree for
COG0417
PolB, DNA polymerase elongation subunit (family B) DNA replication, recombination, and repair
R555C
[fasta] [tree]
tree for
COG0419
SbcC, ATPase involved in DNA repair DNA replication, recombination, and repair
R555D
[fasta] [tree]
tree for
COG0420
SbcD, DNA repair exonuclease DNA replication, recombination, and repair
L254
L393
[fasta] [tree]
tree for
COG0443
DnaK, Molecular chaperone Posttranslational modification, protein turnover, chaperones
L619
[fasta] [tree]
tree for
COG0449
GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains Cell envelope biogenesis, outer membrane
L251
[fasta] [tree]
tree for
COG0466
Lon, ATP-dependent Lon protease, bacterial type Posttranslational modification, protein turnover, chaperones
R458
[fasta] [tree]
tree for
COG0513
SrmB, Superfamily II DNA and RNA helicases DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis
R290
[fasta] [tree]
tree for
COG0514
RecQ, Superfamily II DNA helicase DNA replication, recombination, and repair
L221
[fasta] [tree]
tree for
COG0550
TopA, Topoisomerase IA DNA replication, recombination, and repair
R343
[fasta] [tree]
tree for
COG0571
Rnc, dsRNA-specific ribonuclease Transcription
L233
[fasta] [tree]
tree for
COG0612
PqqL, Predicted Zn-dependent peptidases General function prediction only
R296
[fasta] [tree]
tree for
COG0648
Nfo, Endonuclease IV DNA replication, recombination, and repair
L605
[fasta] [tree]
tree for
COG0652
PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family Posttranslational modification, protein turnover, chaperones
R526
[fasta] [tree]
tree for
COG0657
Aes, Esterase/lipase Lipid metabolism
L702
[fasta] [tree]
tree for
COG0661
AarF, Predicted unusual protein kinase General function prediction only
L612
[fasta] [tree]
tree for
COG0662
{ManC}, Mannose-6-phosphate isomerase Carbohydrate transport and metabolism
R104
R186
[fasta] [tree]
tree for
COG0675
Transposase and inactivated derivatives DNA replication, recombination, and repair
L249
[fasta] [tree]
tree for
COG0692
Ung, Uracil DNA glycosylase DNA replication, recombination, and repair
R756
[fasta] [tree]
tree for
COG0820
Predicted Fe-S-cluster redox enzyme General function prediction only
L396
[fasta] [tree]
tree for
COG1061
SSL2, DNA or RNA helicases of superfamily II Transcription / DNA replication, recombination, and repair
L498
[fasta] [tree]
tree for
COG1064
AdhP, Zn-dependent alcohol dehydrogenases General function prediction only
L394
[fasta] [tree]
tree for
COG1078
HD superfamily phosphohydrolases General function prediction only
R141
[fasta] [tree]
tree for
COG1088
RfbB, dTDP-D-glucose 4,6-dehydratase Cell envelope biogenesis, outer membrane
R214
[fasta] [tree]
tree for
COG1100
GTPase SAR1 and related small G proteins General function prediction only
R689
[fasta] [tree]
tree for
COG1207
GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) Cell envelope biogenesis, outer membrane
L444
L543
[fasta] [tree]
tree for
COG1397
DraG, ADP-ribosylglycohydrolase Posttranslational modification, protein turnover, chaperones
L250
[fasta] [tree]
tree for
COG1405
SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB Transcription
L258
[fasta] [tree]
tree for
COG1435
Tdk, Thymidine kinase Nucleotide transport and metabolism
R726
[fasta] [tree]
tree for
COG1503
eRF1, Peptide chain release factor 1 (eRF1) Translation, ribosomal structure and biogenesis
L540
R366
[fasta] [tree]
tree for
COG1643
HrpA, HrpA-like helicases DNA replication, recombination, and repair
L221
[fasta] [tree]
tree for
COG1754
Uncharacterized C-terminal domain of topoisomerase IA General function prediction only
R470
[fasta] [tree]
tree for
COG1761
RPB11, DNA-directed RNA polymerase, subunit L Transcription
L318
[fasta] [tree]
tree for
COG1796
POL4, DNA polymerase IV (family X) DNA replication, recombination, and repair
R431
[fasta] [tree]
tree for
COG1847
Jag, Predicted RNA-binding protein General function prediction only
L235
[fasta] [tree]
tree for
COG2012
RPB5, DNA-directed RNA polymerase, subunit H, RpoH/RPB5 Transcription
R818
R826
R831
[fasta] [tree]
tree for
COG2114
CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) Signal transduction mechanisms
L374
[fasta] [tree]
tree for
COG2120
Uncharacterized proteins, LmbE homologs Function unknown
L532
L808
[fasta] [tree]
tree for
COG2124
CypX, Cytochrome P450 Secondary metabolites biosynthesis, transport, and catabolism
L280
[fasta] [tree]
tree for
COG2162
NhoA, Arylamine N-acetyltransferase Secondary metabolites biosynthesis, transport, and catabolism
R405
[fasta] [tree]
tree for
COG2265
TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase Translation, ribosomal structure and biogenesis
L128
R135
[fasta] [tree]
tree for
COG2303
BetA, Choline dehydrogenase and related flavoproteins Amino acid transport and metabolism
L103
R771
R80
[fasta] [tree]
tree for
COG2452
Predicted site-specific integrase-resolvase DNA replication, recombination, and repair
R622
[fasta] [tree]
tree for
COG2453
CDC14, Predicted protein-tyrosine phosphatase Signal transduction mechanisms
L300
[fasta] [tree]
tree for
COG2827
Predicted endonuclease containing a URI domain DNA replication, recombination, and repair
R877
[fasta] [tree]
tree for
COG3040
Blc, Bacterial lipocalin Cell envelope biogenesis, outer membrane
R521
[fasta] [tree]
tree for
COG3115
ZipA, Cell division protein Cell division and chromosome partitioning
L905
R406
[fasta] [tree]
tree for
COG3145
AlkB, Alkylated DNA repair protein DNA replication, recombination, and repair
R617
[fasta] [tree]
tree for
COG3236
Uncharacterized protein conserved in bacteria Function unknown
R836
[fasta] [tree]
tree for
COG3323
Uncharacterized protein conserved in bacteria Function unknown
L206
[fasta] [tree]
tree for
COG3378
Predicted ATPase General function prediction only
L153
[fasta] [tree]
tree for
COG3544
Uncharacterized protein conserved in bacteria Function unknown
R194
[fasta] [tree]
tree for
COG3569
Topoisomerase IB DNA replication, recombination, and repair
R519
[fasta] [tree]
tree for
COG3590
PepO, Predicted metalloendopeptidase Posttranslational modification, protein turnover, chaperones
L620
[fasta] [tree]
tree for
COG3621
Patatin General function prediction only
L373
[fasta] [tree]
tree for
COG3774
OCH1, Mannosyltransferase OCH1 and related enzymes Cell envelope biogenesis, outer membrane
L687
[fasta] [tree]
tree for
COG4294
Uve, UV damage repair endonuclease DNA replication, recombination, and repair
L432
[fasta] [tree]
tree for
COG4341
Predicted HD phosphohydrolase General function prediction only
R824
[fasta] [tree]
tree for
COG4502
Uncharacterized protein conserved in bacteria Function unknown
R700
[fasta] [tree]
tree for
COG4826
Serine protease inhibitor Posttranslational modification, protein turnover, chaperones
L477
[fasta] [tree]
tree for
COG4870
Cysteine protease Posttranslational modification, protein turnover, chaperones
L268
L670
[fasta] [tree]
tree for
COG5024
Cyclin Cell division and chromosome partitioning
L615
[fasta] [tree]
tree for
COG5032
TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion
R528
[fasta] [tree]
tree for
COG5049
XRN1, 5'-3' exonuclease DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation
L496
[fasta] [tree]
tree for
COG5053
CDC33, Translation initiation factor 4E (eIF-4E) Translation, ribosomal structure and biogenesis
R368
R596
[fasta] [tree]
tree for
COG5054
ERV1, Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins Posttranslational modification, protein turnover, chaperones
L621
[fasta] [tree]
tree for
COG5092
NMT1, N-myristoyl transferase Lipid metabolism
R795
[fasta] [tree]
tree for
COG5194
APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning
R624
[fasta] [tree]
tree for
COG5258
GTPBP1, GTPase General function prediction only
R707
[fasta] [tree]
tree for
COG5597
Alpha-N-acetylglucosamine transferase Cell envelope biogenesis, outer membrane




Contact: Hiro Ogata and Karsten Suhre

Last modification: 25 May 2005